Office: Room A16-614, Science and Engineering Building, Lantan Compus 蘭潭校區理工大樓A16-614
Office phone: (05)271-7731
Fax: (05)271-7741 (in departmental office資工系辦公室)
Lab of Biological Data Mining 生物資料探勘實驗室

1. Huang-Cheng Kuo, Shih-Hao Chen. Self-Organizing Map Learning with Momentum.Computer and Information Science.9(1), 2016, 136-146
2. Huang-Cheng Kuo and Ming-Yi Tai.Classifying Protein-Protein Interaction Type based on Association Pattern with Adjusted Support.Advances in Computer Science: an International Journal.4(4), 2015, 73-79
Huang-Cheng Kuo and Ken-I Lin.Extracting Protein Names from Biological Literature.Advances in Computer Science: an International Journal.3(2), 2014, 58-68
3. Huang-Cheng Kuo and Jia-Hao Li: Using Binding Site Features for Protein-protein Interaction Classification with Genetic Programming. Journal of Convergence Information Technology, Vol. 7, No. 14, August 2012, 176-184. (EI)
4. Huang-Cheng Kuo: Automatic Concept Hierarchy Construction from a Distance Matrix. FTRA Journal of Convergence Vol.3, No.2, Jun. 30, 9-14 (2012)
5. Huang-Cheng Kuo and Pei-Cheng Tsai: Mining Time-delayed Gene Regulation Patterns from Gene Expression Data. GSTF Journal on Computing 2(1): 68-72 (2012)
6. Huang-Cheng Kuo, Jung-Chang Lin, Ping-Lin Ong, Jen-Peng Huang: Discovering Amino Acid Patterns on Binding Sites in Protein Complexes. Bioinformation 6(1): 10-14 (2011)
7. Huang-Cheng Kuo, Tsung-Lung Lee, Jen-Peng Huang: Cluster Analysis on Time Series Gene Expression Data. IJBIDM 5(1): 56-76 (2010)
8. Jen-Peng Huang, Show-Ju Chen, Huang-Cheng Kuo: An Efficient Incremental Mining Algorithm-QSD. Intell. Data Anal. 11(3): 265-278 (2007) (SCI)
9. Huang-Cheng Kuo, Te-Wen Hsieh, Jen-Peng Huang: Deriving Feature Vector from Biological Sequence for Filtering in Similarity Search. Communications of the ICISA, Vol. 8, No. 2, pp. 49-69, FALL 2007.

Conference papers

1. Huang-Cheng Kuo and Ping-Lin Ong: Classifying Protein Interaction Type with Associative Patterns. IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, pp. 143-147, 2013.
2. Huang-Cheng Kuo and Jia-Hao Li: Classification and Screening of Recognition Protein Complexes with Genetic Programming. IEEE International Conference on Bioinformatics and Bioengineering, pp. 287-290, 2011.
3. Huang-Cheng Kuo, Kuan-Yu Su, Jia-Hao Li, Ping-Lin Ong: Classification of Protein-protein Recognition with Genetic Programming. International Conference on Computer Sciences and Convergence Information Technology, pp. 722-726, 2010.
4. Jen-Peng Huang and Huang-Cheng Kuo: A Filtering Approach for Mining Frequent Itemsets. IEA/EIA 2009, Opportunities and Challenges for Next-Generation Applied Intelligence, Studies in Computational Intelligence, Vol. 214, pp. 59-63, 2009
5. Huang-Cheng Kuo, Pei-Cheng Tsai, Jen-Peng Huang: Finding Time-Delayed Gene Regulation Patterns from Microarray Data. HIS (1) 2009: 117-122
6. Huang-Cheng Kuo, Kuan-Yu Su, Ping-Lin Ong, Jen-Peng Huang: Learning a prediction model for protein-protein recognition. Int. Conf. Interaction Sciences 2009: 736-741
7. Huang-Cheng Kuo, Ping-Lin Ong, Jia-Jie Li, Jen-Peng Huang: Predicting Protein-Protein Recognition Using Feature Vector. ISDA (2) 2008: 45-50
8. Huang-Cheng Kuo, Ping-Lin Ong, Jung-Chang Lin, Jen-Peng Huang: Prediction of Protein-Protein Recognition Using Support Vector Machine Based on Feature Vectors. Workshop on Data Mining in Functional Genomics (in Conjunction with IEEE International Conference on Bioinformatics and Biomedicine), 2008.
9. Huang-Cheng Kuo, Hung-Chung Lai, Jen-Peng Huang: Building A Concept Hierarchy Automatically And Its Measuring. International Conference on Machine Learning and Cybernetics, 2008
10. Jen-Peng Huang, Guo-Cheng Lan, Huang-Cheng Kuo: A Gradational Reduction Approach for Mining Sequential Patterns. IEA/AIE 2007: 562-571
11. Huang-Cheng Kuo, Pei-Yuan Jou, Jen-Pen Huang: Adaptive Weighting Distance for Feature Vectors Of Biological Sequences. International Conference on Machine Learning and Cybernetics, Vol. 4, pp. 2269-2273, 2007.
12. Huang-Cheng Kuo, Yu-Cheng Tseng, and Jen-Peng Huang: Learning Weight Assignment in Distance Function for Biological Sequence Feature Vector by Genetic Algorithm. International Conference on Innovative Computing, Information and Control, 2007
13. Jen-Peng Huang, Guo-Cheng Lan, Huang-Cheng Kuo, and Tzung-Pei Hong: A Decomposition Approach for Mining Frequent Itemsets. International Conference on Intelligent Information Hiding and Multimedia Signal Processing, Vol. 2, pp. 605-608, 2007
14. Te-Wen Hsieh, Huang-Cheng Kuo, Jen-Peng Huang: Filtering Bio-sequence Based on Sequence Descriptor. BioDM 2006: 14-23
15. Huang-Cheng Kuo, Tsung-Han Tsai, Jen-Peng Huang: Building a Concept Hierarchy by Hierarchical Clustering with Join/Merge Decision. JCIS 2006
16. Huang-Cheng Kuo, Jen-Peng Huang: Building a Concept Hierarchy from a Distance Matrix. Intelligent Information Systems 2005: 87-96
17. Huang-Cheng Kuo: A Divisive Ordering Algorithm for Mapping Categorical Data to Numeric Data. KES (2) 2005: 979-985
18. Huang-Cheng Kuo, Yi-Sen Lin, Jen-Peng Huang: Distance Preserving Mapping from Categories to Numbers for Indexing. KES 2004: 1245-1251
19. Huang-Cheng Kuo, Gultekin Ozsoyoglu: Selecting Actions to Trigger in Active Database Applications. DEXA 1998: 60-69
20. Huang-Cheng Kuo, Gultekin Ozsoyoglu: A Framework for Cooperative Real-Time Transactions. RTDB 1996: 118-121
21. Taekyong Lee, Tolga Bozkaya, Huang-Cheng Kuo, Gultekin Ozsoyoglu, Z. Meral Ozsoyoglu: A Scientific Multimedia Database System for Polymer Science Experiments. SSDBM 1996: 86-95